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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
13
14
15
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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99 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ABLIM1
ENSSSCG00000010651
ENSG00000099204
Actin binding LIM protein 1
Tissue enhanced
Detected in all
heart:
201.3
ABRA
ENSSSCG00000031728
ENSG00000174429
Actin-binding Rho-activating protein
Group enriched
Detected in many
heart:
32.7
skeletal muscle:
59.6
ACVR2B
ENSSSCG00000011257
ENSG00000114739
Activin receptor type-2B precursor
Tissue enhanced
Detected in all
skeletal muscle:
35.6
ADRB1
ENSSSCG00000010647
ENSG00000043591
Beta-1 adrenergic receptor
Tissue enhanced
Detected in many
cartilage:
21.2
heart:
30.9
lymphoid tissue:
27.4
male glands:
54.3
APOBEC2
ENSSSCG00000036018
ENSG00000124701
Apolipoprotein B mRNA editing enzyme catalytic subunit 2
Tissue enhanced
Detected in all
heart:
33.8
skeletal muscle:
76.2
ASB16
ENSSSCG00000039673
ENSG00000161664
Ankyrin repeat and SOCS box containing 16
Tissue enhanced
Detected in all
skeletal muscle:
61.1
COMTD1
ENSSSCG00000037237
ENSG00000165644
Catechol-O-methyltransferase domain containing 1
Low tissue specificity
Detected in all
CORIN
ENSSSCG00000008813
ENSG00000145244
Corin, serine peptidase
Group enriched
Detected in some
choroid plexus:
15.0
heart:
43.5
liver:
18.0
COX6A2
ENSSSCG00000036789
ENSG00000156885
Cytochrome c oxidase subunit 6A2
Tissue enhanced
Detected in all
heart:
67.7
skeletal muscle:
101.5
CPT1B
ENSSSCG00000022364
ENSG00000205560
Carnitine O-palmitoyltransferase 1, muscle isoform
Tissue enhanced
Detected in many
heart:
80.4
skeletal muscle:
38.4
DCLRE1A
ENSSSCG00000010644
ENSG00000198924
DNA cross-link repair 1A
Tissue enhanced
Detected in all
heart:
25.9
DCUN1D2
ENSSSCG00000026536
ENSG00000150401
Defective in cullin neddylation 1 domain containing 2
Tissue enhanced
Detected in all
skeletal muscle:
48.5
GATA4
ENSSSCG00000022383
ENSG00000136574
Transcription factor GATA-4
Tissue enhanced
Detected in some
heart:
36.1
small intestine:
21.6
stomach:
67.0
GCK
ENSSSCG00000016751
ENSG00000106633
Myosin regulatory light chain 2, atrial isoform
Tissue enriched
Detected in some
heart:
414.0
IL31RA
ENSSSCG00000016915
ENSG00000164509
Interleukin 31 receptor A
Tissue enhanced
Detected in some
male glands:
22.8
KLHL30
ENSSSCG00000026600
ENSG00000168427
Kelch like family member 30
Tissue enhanced
Detected in all
heart:
24.6
LIX1
ENSSSCG00000023396
ENSG00000145721
Limb and CNS expressed 1
Group enriched
Detected in many
heart:
54.7
lymphoid tissue:
21.5
smooth muscle:
25.8
LRRC10
ENSSSCG00000036760
ENSG00000198812
Leucine rich repeat containing 10
Tissue enriched
Detected in single
heart:
48.8
LSMEM2
ENSSSCG00000011401
ENSG00000179564
Leucine rich single-pass membrane protein 2
Tissue enhanced
Detected in many
heart:
22.2
vagus nerve:
20.8
METTL21C
ENSSSCG00000031101
ENSG00000139780
Methyltransferase like 21C
Tissue enhanced
Detected in all
skeletal muscle:
34.1
MIGA2
ENSSSCG00000005669
ENSG00000148343
Mitoguardin 2
Tissue enhanced
Detected in all
heart:
54.4
MYBPC3
ENSSSCG00000013236
ENSG00000134571
Myosin binding protein C, cardiac
Tissue enriched
Detected in some
heart:
207.4
MYL4
ENSSSCG00000017307
ENSG00000198336
Myosin light chain 4
Tissue enriched
Detected in some
heart:
466.8
na
ENSSSCG00000003746
Tissue enhanced
Detected in many
heart:
11.1
thyroid gland:
9.8
na
ENSSSCG00000003838
Tissue enhanced
Detected in many
heart:
28.0
skeletal muscle:
24.9
na
ENSSSCG00000005430
Group enriched
Detected in some
heart:
13.4
lens:
13.2
na
ENSSSCG00000010117
Tissue enhanced
Detected in many
epididymis:
17.8
retina:
13.1
skeletal muscle:
11.8
na
ENSSSCG00000010194
Tissue enhanced
Detected in many
choroid plexus:
13.1
epididymis:
11.5
na
ENSSSCG00000012049
ENSG00000180509,ENSG00000276289
Group enriched
Detected in many
ductus deferens:
18.2
heart:
53.0
ovary:
16.4
small intestine:
35.1
na
ENSSSCG00000012700
ENSG00000129680
Tissue enhanced
Detected in all
heart:
36.3
na
ENSSSCG00000015308
Tissue enhanced
Detected in many
mesothelial tissue:
16.1
na
ENSSSCG00000022567
Tissue enriched
Detected in some
heart:
20.8
na
ENSSSCG00000028682
ENSG00000167646
Tissue enriched
Detected in many
heart:
209.7
na
ENSSSCG00000030594
Tissue enhanced
Detected in many
esophagus:
49.6
heart:
36.6
na
ENSSSCG00000031194
Tissue enhanced
Detected in some
adipose tissue:
5.2
heart:
8.5
na
ENSSSCG00000032616
Tissue enhanced
Detected in many
heart:
30.7
smooth muscle:
25.9
na
ENSSSCG00000033240
Low tissue specificity
Detected in all
na
ENSSSCG00000033362
Tissue enhanced
Detected in many
heart:
10.2
smooth muscle:
5.1
na
ENSSSCG00000033405
ENSG00000162621
Tissue enriched
Detected in some
heart:
17.8
na
ENSSSCG00000033644
Low tissue specificity
Detected in many
na
ENSSSCG00000033862
Group enriched
Detected in some
heart:
6.5
ovary:
25.5
na
ENSSSCG00000034179
Group enriched
Detected in some
choroid plexus:
24.8
epididymis:
7.2
heart:
10.7
na
ENSSSCG00000035510
Tissue enhanced
Detected in some
heart:
2.9
na
ENSSSCG00000035919
Tissue enriched
Detected in single
heart:
25.8
na
ENSSSCG00000035936
Tissue enriched
Detected in some
ovary:
33.0
na
ENSSSCG00000036234
Group enriched
Detected in some
epididymis:
10.7
heart:
21.5
na
ENSSSCG00000036903
Tissue enhanced
Detected in many
thyroid gland:
39.6
na
ENSSSCG00000036982
Tissue enriched
Detected in some
heart:
34.1
na
ENSSSCG00000037329
Tissue enhanced
Detected in some
heart:
5.4
smooth muscle:
4.6
na
ENSSSCG00000037458
Tissue enriched
Detected in some
heart:
28.9
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